Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
abs_max (flyeye.data.image.ScalarField property)
add_edges_to_plot() (flyeye.processing.triangulation.Triangulation method)
aggregate_discs() (flyeye.processing.alignment.MultiExperimentAlignment static method)
align() (flyeye.processing.alignment.Alignment method)
align_discs() (flyeye.data.experiments.Experiment method)
(flyeye.processing.alignment.ExperimentAlignment method)
align_experiments() (flyeye.processing.alignment.MultiExperimentAlignment method)
align_to_first_r8() (flyeye.data.experiments.Experiment method)
Alignment (class in flyeye.processing.alignment)
annotate_fraction() (flyeye.data.cells.Cells static method)
apply() (flyeye.dynamics.resampling.DiscResampler method)
apply_colormap() (flyeye.data.image.ScalarField method)
apply_custom_roller() (in module flyeye.dynamics.averages)
apply_filter() (flyeye.data.image.ScalarField method)
apply_lag() (flyeye.data.cells.Cells method)
(flyeye.data.discs.Disc method)
(flyeye.data.experiments.Experiment method)
apply_time_scaling() (flyeye.data.discs.Disc method)
apply_to_disc() (flyeye.processing.alignment.DiscAlignment static method)
average() (flyeye.dynamics.visualization.IntervalPlot method)
(flyeye.dynamics.visualization.TimeseriesPlot method)
B
bootstrap() (flyeye.analysis.correlation.CorrelationData class method)
(flyeye.dynamics.resampling.DiscResampler method)
(in module flyeye.dynamics.averages)
build_colorfilter() (flyeye.data.image.Image method)
C
cell_types (flyeye.data.cells.CellProperties property)
CellProperties (class in flyeye.data.cells)
Cells (class in flyeye.data.cells)
CellsAlignment (class in flyeye.processing.alignment)
channels (flyeye.data.cells.CellProperties property)
compile_measurements() (flyeye.data.silhouette.SilhouetteData method)
confidence_interval (flyeye.dynamics.resampling.DiscResampler property)
CorrelationData (class in flyeye.analysis.correlation)
create_figure() (flyeye.dynamics.visualization.TimeseriesPlot method)
D
detrend() (flyeye.data.discs.Disc method)
detrend_signal() (in module flyeye.dynamics.averages)
Disc (class in flyeye.data.discs)
DiscAlignment (class in flyeye.processing.alignment)
DiscProperties (class in flyeye.data.discs)
DiscResampler (class in flyeye.dynamics.resampling)
E
Experiment (class in flyeye.data.experiments)
ExperimentAlignment (class in flyeye.processing.alignment)
ExperimentTriangulation (class in flyeye.processing.triangulation)
F
flip_about_xy() (flyeye.data.discs.Disc method)
(flyeye.data.silhouette.Silhouette method)
flip_about_yz() (flyeye.data.discs.Disc method)
(flyeye.data.silhouette.Silhouette method)
fliplr() (flyeye.data.image.ScalarField method)
flyeye.analysis.correlation
module
flyeye.data.cells
module
flyeye.data.discs
module
flyeye.data.experiments
module
flyeye.data.image
module
flyeye.data.silhouette
module
flyeye.dynamics.averages
module
flyeye.dynamics.resampling
module
flyeye.dynamics.visualization
module
flyeye.processing.alignment
module
flyeye.processing.triangulation
module
from_8bit() (flyeye.data.image.ScalarField static method)
from_experiment() (flyeye.analysis.correlation.SpatialCorrelation static method)
from_silhouette() (flyeye.data.discs.Disc static method)
(flyeye.data.image.ImageStack static method)
from_tiff() (flyeye.data.image.Image static method)
G
generate_point_estimates() (flyeye.dynamics.resampling.DiscResampler method)
get_aligned_disc() (flyeye.processing.alignment.DiscAlignment method)
get_aligned_experiment() (flyeye.processing.alignment.ExperimentAlignment method)
get_aligned_experiments() (flyeye.processing.alignment.MultiExperimentAlignment method)
get_binned_mean() (flyeye.data.cells.Cells static method)
(in module flyeye.dynamics.averages)
get_binned_stats() (flyeye.analysis.correlation.CorrelationData static method)
get_cells() (flyeye.data.experiments.Experiment method)
get_covariance_vector() (flyeye.analysis.correlation.SpatialCorrelation class method)
get_crop_indices() (flyeye.data.image.ScalarField method)
get_disc() (flyeye.processing.triangulation.Triangulation method)
get_distances_vector() (flyeye.analysis.correlation.SpatialCorrelation class method)
get_early_neuron_data() (flyeye.data.experiments.Experiment method)
get_layer() (flyeye.data.image.ImageStack method)
get_matrix_upper() (flyeye.analysis.correlation.SpatialCorrelation static method)
get_multipotent_layers() (flyeye.data.discs.Disc method)
get_nuclear_diameter() (flyeye.data.cells.Cells method)
get_pairwise_alignment() (flyeye.data.experiments.Experiment method)
get_rolling_gaussian() (in module flyeye.dynamics.averages)
get_rolling_mean() (in module flyeye.dynamics.averages)
get_rolling_mean_interval() (in module flyeye.dynamics.averages)
get_rolling_window() (in module flyeye.dynamics.averages)
get_running_mean() (in module flyeye.dynamics.averages)
get_smoothed_scores() (flyeye.processing.alignment.Alignment method)
grey_closing() (flyeye.data.image.Smoothing static method)
I
Image (class in flyeye.data.image)
ImageStack (class in flyeye.data.image)
interval() (flyeye.dynamics.visualization.IntervalPlot method)
(flyeye.dynamics.visualization.TimeseriesPlot method)
IntervalPlot (class in flyeye.dynamics.visualization)
is_flipped_about_xy (flyeye.data.discs.DiscProperties property)
(flyeye.data.silhouette.Silhouette property)
is_flipped_about_yz (flyeye.data.discs.DiscProperties property)
(flyeye.data.silhouette.Silhouette property)
L
labels (flyeye.data.silhouette.SilhouetteData property)
load() (flyeye.data.experiments.Experiment static method)
(flyeye.data.silhouette.SilhouetteData method)
load_image() (flyeye.data.image.Image static method)
load_imagestack() (flyeye.data.discs.Disc method)
load_measurements() (flyeye.data.silhouette.SilhouetteData method)
load_orientation() (flyeye.data.silhouette.Silhouette method)
M
max (flyeye.data.image.ScalarField property)
mean (flyeye.dynamics.resampling.DiscResampler property)
median_filter() (flyeye.data.image.Smoothing static method)
min (flyeye.data.image.ScalarField property)
module
flyeye.analysis.correlation
flyeye.data.cells
flyeye.data.discs
flyeye.data.experiments
flyeye.data.image
flyeye.data.silhouette
flyeye.dynamics.averages
flyeye.dynamics.resampling
flyeye.dynamics.visualization
flyeye.processing.alignment
flyeye.processing.triangulation
MultiExperimentAlignment (class in flyeye.processing.alignment)
N
normalize_by_reference() (flyeye.data.discs.Disc method)
normalize_expression() (flyeye.data.discs.Disc method)
normalized_channels (flyeye.data.cells.CellProperties property)
num_channels (flyeye.data.cells.CellProperties property)
num_discs (flyeye.data.experiments.Experiment property)
num_progenitors (flyeye.data.experiments.Experiment property)
O
overlay_epression() (flyeye.processing.triangulation.Triangulation method)
P
parse_contour() (flyeye.data.silhouette.SilhouetteData static method)
path (flyeye.data.discs.DiscProperties property)
plot() (flyeye.dynamics.visualization.IntervalPlot method)
(flyeye.dynamics.visualization.TimeseriesPlot method)
plot_alignment() (flyeye.processing.alignment.Alignment method)
plot_dynamics() (flyeye.data.cells.Cells method)
plot_expression() (flyeye.processing.triangulation.ExperimentTriangulation method)
(flyeye.processing.triangulation.Triangulation method)
plot_histogram() (flyeye.processing.triangulation.Triangulation method)
plot_mean() (in module flyeye.dynamics.visualization)
plot_mean_interval() (in module flyeye.dynamics.visualization)
plot_resampled_dynamics() (flyeye.data.cells.Cells method)
plot_scores() (flyeye.processing.alignment.Alignment method)
plot_spectrogram() (flyeye.data.cells.Cells method)
project_max() (flyeye.data.image.ImageStack method)
project_mean() (flyeye.data.image.ImageStack method)
R
read_contours() (flyeye.data.silhouette.SilhouetteData method)
read_json() (flyeye.data.silhouette.Silhouette method)
read_labels() (flyeye.data.silhouette.SilhouetteData method)
render() (flyeye.data.image.Image method)
(flyeye.data.image.ScalarField method)
roll() (flyeye.dynamics.resampling.DiscResampler method)
rotate() (flyeye.data.image.ScalarField method)
S
save() (flyeye.data.image.ScalarField method)
save_measurements() (flyeye.data.silhouette.SilhouetteData method)
savgol() (in module flyeye.dynamics.averages)
ScalarField (class in flyeye.data.image)
scatter() (flyeye.dynamics.visualization.TimeseriesPlot method)
scatterplot() (flyeye.data.cells.Cells method)
select_by_concurrency() (flyeye.data.experiments.Experiment method)
select_by_position() (flyeye.data.cells.Cells method)
select_cell_type() (flyeye.data.cells.Cells method)
set_ratio() (flyeye.data.discs.Disc method)
(flyeye.data.experiments.Experiment method)
show() (flyeye.processing.triangulation.Triangulation method)
show_alignment() (flyeye.processing.triangulation.ExperimentTriangulation method)
show_triangulations() (flyeye.processing.triangulation.ExperimentTriangulation method)
Silhouette (class in flyeye.data.silhouette)
SilhouetteData (class in flyeye.data.silhouette)
smooth() (flyeye.data.image.ScalarField method)
Smoothing (class in flyeye.data.image)
sort() (flyeye.data.cells.Cells method)
SpatialCorrelation (class in flyeye.analysis.correlation)
standardize_labels() (flyeye.data.discs.Disc method)
subsample() (in module flyeye.dynamics.averages)
subsample_discs() (flyeye.dynamics.resampling.DiscResampler method)
T
TimeseriesPlot (class in flyeye.dynamics.visualization)
triangulate() (flyeye.processing.triangulation.Triangulation method)
Triangulation (class in flyeye.processing.triangulation)
U
uint8_to_float32() (flyeye.data.image.ScalarField static method)
V
visualize() (flyeye.analysis.correlation.CorrelationData method)
W
write_feed() (flyeye.data.silhouette.Silhouette method)
write_feud() (flyeye.data.silhouette.Silhouette method)
write_json() (flyeye.data.silhouette.Silhouette method)
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