.. _analysis:

.. image:: ../graphics/Northwestern_purple_RGB.png
   :width: 30%
   :align: right
   :alt: nulogo


Analysis Module
===============

``flyeye.analysis`` provides tools for detecting periodic spatial patterns of expression in the developing *Drosophila* eye field.


Spatial Correlations
--------------------

Tools for quantifying expression similarity as a function of distance between cells.

.. automodule:: flyeye.analysis.correlation
   :members:


Spectrogram
-----------

Tools for statistical detection of periodic spatial patterns, primarily via the AstroML library.


.. automodule:: flyeye.analysis.spectrogram
   :members: